Cryptic crossword clue
Alliance when very good intelligence agency stands over state missing two leaders 11

The most common and most likely answer to this crossword clue is the 11 letter word ASSOCIATION

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Buddy explains!

The straight part
We know that "Alliance" is the straight/definition part of the clue. The straight part is often a synonym or definition, in this case alliance = association.
The cryptic/wordplay part
In cryptic crossword there's often an wordplay/cryptic part as well.
This part involves a more complex hint, such as an anagram, homophone, hidden word, etc.
Sadly, We don't have an explanation for this specific crossword clue yet.

What does ASSOCIATION mean?

ASSOCIATION noun
  1. The act of associating.
  2. The state of being associated; a connection to or an affiliation with something.
  3. Any relationship between two measured quantities that renders them statistically dependent (but not necessarily causal or a correlation).
  4. A group of persons associated for a common purpose; an organization; society.
  5. Relationship between classes of objects that allows one object instance to cause another to perform an action on its behalf.

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