The most common and most likely answer to this crossword clue is the 3 plus 6 plus 6 letter word THE SECRET GARDEN
I've seen this crossword clue in The Guardian
T
H
E
S
E
C
R
E
T
G
A
R
D
E
N
Buddy explains!
The straight part
We know that "story" is the straight/definition part of the clue. The straight part is often a synonym or definition, in this case story = the secret garden.The cryptic/wordplay part
In cryptic crossword there's often an wordplay/cryptic part as well.This part involves a more complex hint, such as an anagram, homophone, hidden word, etc.
Sadly, We don't have an explanation for this specific crossword clue yet.