Cryptic crossword clue
Crossbreeding at the farm will have later consequences 9

The most common and most likely answer to this crossword clue is the 9 letter word AFTERMATH

I've seen this crossword clue in Independent
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The straight part
We know that "later consequences" is the straight/definition part of the clue. The straight part is often a synonym or definition, in this case later consequences = aftermath.
The cryptic/wordplay part
In cryptic crossword there's often an wordplay/cryptic part as well.
This part involves a more complex hint, such as an anagram, homophone, hidden word, etc.
Sadly, We don't have an explanation for this specific crossword clue yet.

What does AFTERMATH mean?

AFTERMATH noun
  1. A second mowing; the grass which grows after the first crop of hay in the same season.
  2. That which happens after, that which follows, usually of strongly negative connotation in most contexts, implying a preceding catastrophe.

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