Cryptic crossword clue
Cyst disappeared, but not completely 3

The most common and most likely answer to this crossword clue is the 3 letter word WEN

W
E
N

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The straight part
We know that "Cyst" is the straight/definition part of the clue. The straight part is often a synonym or definition, in this case cyst = wen.
The cryptic/wordplay part
In cryptic crossword there's often an wordplay/cryptic part as well.
This part involves a more complex hint, such as an anagram, homophone, hidden word, etc.
Sadly, We don't have an explanation for this specific crossword clue yet.

What does WEN mean?

WEN noun
  1. A cyst on the skin.
WEN noun
  1. A runic letter later replaced by w
WEN noun
  1. The time at which something happens.
WEN adverb
  1. (interrogative) At what time? At which time? Upon which occasion or circumstance? Used to introduce direct or indirect questions about time.
  2. At an earlier time and under different, usually less favorable, circumstances.
  3. (relative) At which, on which, during which: often omitted or replaced with that.
WEN pronoun
  1. (interrogative) What time; which time.
  2. The time that.
WEN conjunction
  1. At (or as soon as) that time that; at the (or any and every) time that; if.
  2. During the time that; at the time of the action of the following clause or participle phrase.
  3. At what time; at which time.
  4. Since; given the fact that; considering that.
  5. Whereas; although; at the same time as; in spite of the fact that.

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