Cryptic crossword clue
Linguistic term from SW, perhaps, used by the writer 6

The most common and most likely answer to this crossword clue is the 6 letter word TONEME

T
O
N
E
M
E

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The straight part
We know that "Linguistic term" is the straight/definition part of the clue. The straight part is often a synonym or definition, in this case linguistic term = toneme.
The cryptic/wordplay part
In cryptic crossword there's often an wordplay/cryptic part as well.
This part involves a more complex hint, such as an anagram, homophone, hidden word, etc.
Sadly, We don't have an explanation for this specific crossword clue yet.

What does TONEME mean?

TONEME noun
  1. A phoneme in a language that uses different tones for different meanings.

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