The most common and most likely answer to this crossword clue is the 6 plus 7 letter word UNITED NATIONS
I've seen this crossword clue in The Daily Telegraph
U
N
I
T
E
D
N
A
T
I
O
N
S
Buddy explains!
The straight part
We know that "NY-based organisation" is the straight/definition part of the clue. The straight part is often a synonym or definition, in this case ny-based organisation = united nations.The cryptic/wordplay part
In cryptic crossword there's often an wordplay/cryptic part as well.This part involves a more complex hint, such as an anagram, homophone, hidden word, etc.
Sadly, We don't have an explanation for this specific crossword clue yet.