The most common and most likely answer to this crossword clue is the 6 plus 6 letter word LORD’S PRAYER
I've seen this crossword clue in The Guardian
L
O
R
D
â
€
™
S
P
R
A
Y
E
R
Buddy explains!
The straight part
We know that "words in church?" is the straight/definition part of the clue. The straight part is often a synonym or definition, in this case words in church? = lord’s prayer.The cryptic/wordplay part
In cryptic crossword there's often an wordplay/cryptic part as well.This part involves a more complex hint, such as an anagram, homophone, hidden word, etc.
Sadly, We don't have an explanation for this specific crossword clue yet.