Cryptic crossword clue
Put in order: fish, one small fish, gutted 6

The most common and most likely answer to this crossword clue is the 6 letter word CODIFY

I've seen this crossword clue in The Guardian
C
O
D
I
F
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Buddy explains!

The straight part
We know that "Put in order" is the straight/definition part of the clue. The straight part is often a synonym or definition, in this case put in order = codify.
The cryptic/wordplay part
In cryptic crossword there's often an wordplay/cryptic part as well.
This part involves a more complex hint, such as an anagram, homophone, hidden word, etc.
Sadly, We don't have an explanation for this specific crossword clue yet.

What does CODIFY mean?

CODIFY verb
  1. To reduce to a code, to arrange into a code.
  2. To collect and arrange in a systematic form.

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