Cryptic crossword clue
Rodent burrowing under courtyard in ecologically significant area 7

The most common and most likely answer to this crossword clue is the 7 letter word QUADRAT

I've seen this crossword clue in Financial Times
Q
U
A
D
R
A
T

Buddy explains!

The straight part
We know that "ecologically significant area" is the straight/definition part of the clue. The straight part is often a synonym or definition, in this case ecologically significant area = quadrat.
The cryptic/wordplay part
In cryptic crossword there's often an wordplay/cryptic part as well.
This part involves a more complex hint, such as an anagram, homophone, hidden word, etc.
Sadly, We don't have an explanation for this specific crossword clue yet.

What does QUADRAT mean?

QUADRAT noun
  1. An area of land, marked for studying its plants, animals, soil, natural processes, etc.
QUADRAT noun
  1. A quad; a blank metal block used to fill space in lines of type.
  2. A virtual rectangular subdivision of a line or column of hieroglyphs within which a group of hieroglyphs is arranged.

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