The most common and most likely answer to this crossword clue is the 5 letter word SCALA
S
C
A
L
A
Buddy explains!
The straight part
We know that "Alternatively part of spiral canal (obscure noun)" is the straight/definition part of the clue. The straight part is often a synonym or definition, in this case alternatively part of spiral canal (obscure noun) = scala.The cryptic/wordplay part
In cryptic crossword there's often an wordplay/cryptic part as well.This part involves a more complex hint, such as an anagram, homophone, hidden word, etc.
Sadly, We don't have an explanation for this specific crossword clue yet.