The most common and most likely answer to this crossword clue is the 6 letter word SMUDGY
I've seen this crossword clue in Financial Times
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More clues leading to the result SMUDGY
Buddy explains!
The straight part
We know that "Covered in blotches" is the straight/definition part of the clue. The straight part is often a synonym or definition, in this case covered in blotches = smudgy.The cryptic/wordplay part
In cryptic crossword there's often an wordplay/cryptic part as well.This part involves a more complex hint, such as an anagram, homophone, hidden word, etc.
Sadly, We don't have an explanation for this specific crossword clue yet.
What does SMUDGY mean?
SMUDGY adjective- Marked with smudges.
- Like a thick smoke (such as is emitted by a smudge pot).